2 special perks in Operation: Anchorage, though one is a special perk from the base game ( Power Armor Training).58 regular perks, 5 special perks and 7 quest perks in the normal game.In Fallout 3, the Lone Wanderer will gain a perk every level (as opposed to every three levels in Fallout and Fallout 2, and every two in Fallout: New Vegas).